To cite the Patterns package in publications use:

Frédéric Bertrand and Myriam Maumy-Bertrand (2025). Patterns: reverse engineering of biological networks with patterned expressions, R package version 1.7.<doi:10.32614/CRAN.package.Patterns>.

Bertrand, F., Aouadi, I., Jung, N., Carapito, R., Vallat, L., Bahram, S., Maumy-Bertrand, M. (2020). SelectBoost: a general algorithm to enhance the performance of variable selection methods in correlated datasets. Bioinformatics, btaa855, https://doi.org/10.1093/bioinformatics/btaa855.

Corresponding BibTeX entries:

  @Manual{,
    title = {Patterns: reverse engineering of biological networks with
      patterned expressions},
    author = {Frederic Bertrand and Myriam Maumy-Bertrand},
    year = {2025},
    note = {R package version 1.7},
    url = {https://github.com/fbertran/Patterns},
    doi = {10.32614/CRAN.package.Patterns},
  }

  @Article{,
    title = {Patterns: reverse engineering of biological networks with
      patterned expressions},
    author = {F. Bertrand and I. Aouadi and N. Jung and R. Carapito and
      L. Vallat and S. Bahram and M. Maumy-Bertrand},
    year = {2020},
    journal = {Bioinformatics},
    url = {https://doi.org/10.1093/bioinformatics/btaa855},
  }