Package: plsRcox 1.7.7

plsRcox: Partial Least Squares Regression for Cox Models and Related Techniques

Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings <doi:10.1093/bioinformatics/btu660>, Bastien, P., Bertrand, F., Meyer N., Maumy-Bertrand, M. (2015), Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data, Bioinformatics, 31(3):397-404. Cross validation criteria were studied in <arxiv:1810.02962>, Bertrand, F., Bastien, Ph. and Maumy-Bertrand, M. (2018), Cross validating extensions of kernel, sparse or regular partial least squares regression models to censored data.

Authors:Frederic Bertrand [cre, aut], Myriam Maumy-Bertrand [aut]

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plsRcox.pdf |plsRcox.html✨
plsRcox/json (API)

Peer review:

Bug tracker:https://github.com/fbertran/plsrcox/issues

On CRAN:

24 exports 4 stars 1.85 score 153 dependencies 2 dependents 2 mentions 43 scripts 919 downloads

Last updated 2 years agofrom:297fba5089. Checks:OK: 7. Indexed: yes.

Exports:coxDKpls2DRcoxDKplsDRcoxDKsplsDRcoxplscoxpls2coxpls2DRcoxpls3coxpls3DRcoxplsDRcoxsplsDRcv.autoplsRcoxcv.coxDKplsDRcv.coxDKsplsDRcv.coxplscv.coxplsDRcv.coxsplsDRcv.larsDRcv.plsRcoxDKplsRcoxDKplsRcoxmodelDR_coxphlarsDR_coxphplsRcoxplsRcoxmodel

Dependencies:abindbackportsbase64encBHBiocParallelbipartitebootbootstrapbroombslibcachemcarcarDatacheckmateclasscliclustercodacodetoolscolorspacecorpcorcowplotcpp11data.tableDerivdiagramdigestdoBydotCall64dplyrellipseevaluatefansifarverfastmapfieldsfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsfuturefuture.applygenericsggplot2ggrepelglobalsgluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsigraphipredisobandjquerylibjsonlitekernlabKernSmoothknitrlabelinglambda.rlarslatticelavalifecyclelistenvlme4magrittrmapsMASSMatrixMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamixOmicsmodelrmultcompmunsellmvtnormnetworknlmenloptrnnetnumDerivparallellypbkrtestpermutepillarpkgconfigplsplsRglmplyrpolsplineprodlimprogressrpurrrquantregR6rappdirsrARPACKRColorBrewerRcppRcppEigenreshape2risksetROCrlangrmarkdownrmetarmsrpartRSpectrarstudioapisandwichsassscalesshapesnasnowspamSparseMSQUAREMstatnet.commonstringistringrSuppDistssurvAUCsurvcompsurvivalsurvivalROCTH.datatibbletidyrtidyselecttinytexutf8vctrsveganviridisviridisLitewithrxfunyamlzoo