Package: plsRcox 1.8.2

plsRcox: Partial Least Squares Regression for Cox Models and Related Techniques
Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings <doi:10.1093/bioinformatics/btu660>, Bastien, P., Bertrand, F., Meyer N., Maumy-Bertrand, M. (2015), Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data, Bioinformatics, 31(3):397-404. Cross validation criteria were studied in <doi:10.48550/arXiv.1810.02962>, Bertrand, F., Bastien, Ph. and Maumy-Bertrand, M. (2018), Cross validating extensions of kernel, sparse or regular partial least squares regression models to censored data.
Authors:
plsRcox_1.8.2.tar.gz
plsRcox_1.8.2.zip(r-4.7)plsRcox_1.8.2.zip(r-4.6)plsRcox_1.8.2.zip(r-4.5)
plsRcox_1.8.2.tgz(r-4.6-any)plsRcox_1.8.2.tgz(r-4.5-any)
plsRcox_1.8.2.tar.gz(r-4.7-any)plsRcox_1.8.2.tar.gz(r-4.6-any)
plsRcox_1.8.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
plsRcox/json (API)
| # Install 'plsRcox' in R: |
| install.packages('plsRcox', repos = c('https://fbertran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/fbertran/plsrcox/issues
Pkgdown/docs site:https://fbertran.github.io
- micro.censure - Microsat features and survival times
- Xmicro.censure_compl_imp - Imputed Microsat features
Last updated from:6d429e1a17. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 316 | ||
| source / vignettes | OK | 313 | ||
| linux-release-x86_64 | OK | 298 | ||
| macos-release-arm64 | OK | 192 | ||
| macos-oldrel-arm64 | OK | 131 | ||
| windows-devel | OK | 209 | ||
| windows-release | OK | 195 | ||
| windows-oldrel | OK | 244 | ||
| wasm-release | OK | 214 |
Exports:coxDKpls2DRcoxDKplsDRcoxDKsplsDRcoxplscoxpls2coxpls2DRcoxpls3coxpls3DRcoxplsDRcoxsplsDRcv.autoplsRcoxcv.coxDKplsDRcv.coxDKsplsDRcv.coxplscv.coxplsDRcv.coxsplsDRcv.larsDRcv.plsRcoxDKplsRcoxDKplsRcoxmodelDR_coxphlarsDR_coxphplsRcoxplsRcoxmodel
Dependencies:abindbackportsbase64encBHBiocParallelbipartitebootbootstrapbroombslibcachemcarcarDatacheckmateclasscliclustercodacodetoolscolorspacecorpcorcowplotcpp11data.tableDerivdiagramdigestdoBydotCall64dplyrellipseevaluatefarverfastmapfieldsfontawesomeforecastforeignformatRFormulafracdifffsfutile.loggerfutile.optionsfuturefuture.applygenericsggplot2ggrepelglobalsgluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsigraphipredisobandjquerylibjsonlitekernlabKernSmoothknitrlabelinglambda.rlarslatticelavalifecyclelistenvlme4lmtestmagrittrmapsMASSMatrixMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamixOmicsmodelrmultcompmvtnormnetworknlmenloptrnnetnumDerivparallellypbkrtestpermutepillarpkgconfigplsplsRglmplyrpolsplineprodlimprogressrpurrrquantregR6rappdirsrARPACKrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2rglrisksetROCrlangrmarkdownrmetarmsrpartRSpectrarstudioapiS7sandwichsassscalesshapesnasnowspamSparseMSQUAREMstatnet.commonstringistringrSuppDistssurvAUCsurvcompsurvivalsurvivalROCTH.datatibbletidyrtidyselecttimeDatetinytexurcautf8vctrsveganviridisLitewithrxfunyamlzoo
