Package: plsRcox 1.7.7
plsRcox: Partial Least Squares Regression for Cox Models and Related Techniques
Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings <doi:10.1093/bioinformatics/btu660>, Bastien, P., Bertrand, F., Meyer N., Maumy-Bertrand, M. (2015), Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data, Bioinformatics, 31(3):397-404. Cross validation criteria were studied in <arxiv:1810.02962>, Bertrand, F., Bastien, Ph. and Maumy-Bertrand, M. (2018), Cross validating extensions of kernel, sparse or regular partial least squares regression models to censored data.
Authors:
plsRcox_1.7.7.tar.gz
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plsRcox.pdf |plsRcox.html✨
plsRcox/json (API)
# Install 'plsRcox' in R: |
install.packages('plsRcox', repos = c('https://fbertran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/fbertran/plsrcox/issues
- Xmicro.censure_compl_imp - Imputed Microsat features
- micro.censure - Microsat features and survival times
Last updated 2 years agofrom:297fba5089. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 27 2024 |
R-4.5-win | OK | Oct 27 2024 |
R-4.5-linux | OK | Oct 27 2024 |
R-4.4-win | OK | Oct 27 2024 |
R-4.4-mac | OK | Oct 27 2024 |
R-4.3-win | OK | Aug 21 2024 |
R-4.3-mac | OK | Aug 21 2024 |
Exports:coxDKpls2DRcoxDKplsDRcoxDKsplsDRcoxplscoxpls2coxpls2DRcoxpls3coxpls3DRcoxplsDRcoxsplsDRcv.autoplsRcoxcv.coxDKplsDRcv.coxDKsplsDRcv.coxplscv.coxplsDRcv.coxsplsDRcv.larsDRcv.plsRcoxDKplsRcoxDKplsRcoxmodelDR_coxphlarsDR_coxphplsRcoxplsRcoxmodel
Dependencies:abindbackportsbase64encBHBiocParallelbipartitebootbootstrapbroombslibcachemcarcarDatacheckmateclasscliclustercodacodetoolscolorspacecorpcorcowplotcpp11data.tableDerivdiagramdigestdoBydotCall64dplyrellipseevaluatefansifarverfastmapfieldsfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsfuturefuture.applygenericsggplot2ggrepelglobalsgluegridExtragsignalgtablehighrHmischtmlTablehtmltoolshtmlwidgetsigraphipredisobandjquerylibjsonlitekernlabKernSmoothknitrlabelinglambda.rlarslatticelavalifecyclelistenvlme4magrittrmapsMASSMatrixMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamixOmicsmodelrmultcompmunsellmvtnormnetworknlmenloptrnnetnumDerivparallellypbkrtestpermutepillarpkgconfigplsplsRglmplyrpolsplinepracmaprodlimprogressrpurrrquantregR6rappdirsrARPACKRColorBrewerRcppRcppEigenreshape2rglrisksetROCrlangrmarkdownrmetarmsrpartRSpectrarstudioapisandwichsassscalesshapesnasnowspamSparseMSQUAREMstatnet.commonstringistringrSuppDistssurvAUCsurvcompsurvivalsurvivalROCTH.datatibbletidyrtidyselecttinytexutf8vctrsveganviridisviridisLitewithrxfunyamlzoo